Training Agenda
Tuesday, July 22 - Bulk RNA-seq Analysis & Developer Hands-on Training
9:30 AM – 12:30 PM - Using Foundry for Bulk RNA-seq Analysis
- Welcome & Introduction: Why Foundry?
- Foundry Platform Overview
- Uploading & Managing Data
- Running the Bulk RNA-seq Pipeline and DE module
- Interpreting Results: Reviewing Outputs
- Launching Relevant Apps for Visualization
- Live Q&A
Pipeline Tutorial: RNA-Seq
2:00 PM – 4:00 PM - Developer Training: Building Your Own Nextflow Pipelines in Foundry (Part 1)
- Intro to Pipeline Development in Foundry
- Hands-on Session: Step-by-Step Pipeline Build
- Live Q&A
View Slide Deck Here
Pipeline Tutorial: Building Your Own Pipeline
Wednesday, July 23 - Single-Cell RNA-seq & Advanced Developer Hands-on Training
9:30 AM – 12:30 PM - Using Foundry for Single-Cell RNA-seq Analysis
- Recap & Introduction
- Uploading Single-Cell Data
- Running the scRNA-seq Pipeline
- Interpreting Results: Reviewing Outputs
- Launching Relevant Apps for Visualization
- Live Q&A
Pipeline Tutorial: Single-Cell RNA-Seq
2:00 PM – 4:00 PM - Advanced Developer Training (Part 2)
- Advanced Concepts in Pipeline Development
- App Development Workshop
- Final Q&A and Closing Notes
View Slide Deck Here
